Genome instability Track Settings
 
Genome instability   (All R-loopBase Data tracks)

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Cell Line
BEAS-2B
COLO320-DM
COLO321-HSR
HCT116
HeLa
HepG2
lymphoblastoid
MCF10
MCF7
RPE1-hTERT
U2OS-DIvA
Cell Line
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Technology










Technology
BLISS   BLISS
END-seq   END-seq
H2AX-ChIP-seq   H2AX-ChIP-seq
H2AX-CUT&Tag   H2AX-CUT&Tag
HS-Damage-seq   HS-Damage-seq
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  Cell Line↓1 Technology↓2 Strand↓3   Track Name↓4  
full
 Configure
 BEAS-2B  HS-Damage-seq  no  bigwig_21_BEAS-2B_control_HS-Damage-seq_rep1   Schema 
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 BEAS-2B  HS-Damage-seq  no  bigwig_20_BEAS-2B_control_HS-Damage-seq_rep1   Schema 
full
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 COLO320-DM  END-seq  minus  bigwig_6_COLO320-DM_control_END-seq_minus_rep1   Schema 
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 COLO320-DM  END-seq  plus  bigwig_6_COLO320-DM_control_END-seq_plus_rep1   Schema 
full
 Configure
 COLO321-HSR  END-seq  minus  bigwig_7_COLO321-HSR_control_END-seq_minus_rep1   Schema 
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 Configure
 COLO321-HSR  END-seq  plus  bigwig_7_COLO321-HSR_control_END-seq_plus_rep1   Schema 
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 HCT116  BLISS  no  bigwig_23_HCT116_control_BLISS_rep2   Schema 
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 HCT116  BLISS  no  bigwig_22_HCT116_control_BLISS_rep1   Schema 
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 HeLa  END-seq  no  bigwig_5_HeLa_control_END-seq_rep2   Schema 
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 HeLa  END-seq  no  bigwig_4_HeLa_control_END-seq_rep1   Schema 
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 HeLa  H2AX-ChIP-seq  no  bigwig_11_HeLa_control_H2AX-ChIP-seq_rep1   Schema 
full
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 HepG2  H2AX-CUT&Tag  no  bigwig_15_HepG2_control_H2AX-CUT&Tag_rep1   Schema 
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 HepG2  H2AX-ChIP-seq  no  bigwig_12_HepG2_control_H2AX-ChIP-seq_rep1   Schema 
full
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 MCF10  END-seq  minus  bigwig_3_MCF10_control_END-seq_minus_rep1   Schema 
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 MCF10  END-seq  plus  bigwig_3_MCF10_control_END-seq_plus_rep1   Schema 
full
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 MCF7  BLISS  no  bigwig_24_MCF7_control_BLISS_rep1   Schema 
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 MCF7  BLISS  no  bigwig_25_MCF7_control_BLISS_rep1   Schema 
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 MCF7  H2AX-ChIP-seq  no  bigwig_13_MCF7_control_H2AX-ChIP-seq_rep1   Schema 
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 RPE1-hTERT  END-seq  no  bigwig_1_RPE1-hTERT_control_END-seq_rep1   Schema 
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 RPE1-hTERT  END-seq  no  bigwig_2_RPE1-hTERT_control_END-seq_rep1   Schema 
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 U2OS-DIvA  H2AX-CUT&Tag  no  bigwig_14_U2OS-DIvA_control_H2AX-CUT&Tag_rep1   Schema 
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 lymphoblastoid  H2AX-ChIP-seq  no  bigwig_10_lymphoblastoid_control_H2AX-ChIP-seq_rep2   Schema 
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 lymphoblastoid  H2AX-ChIP-seq  no  bigwig_9_lymphoblastoid_control_H2AX-ChIP-seq_rep1   Schema 
    

Description

This track integrates genomic datasets related to DNA damage and genome instability, including END-seq, BLISS, ?H2AX ChIP-seq, and Damage-seq. END-seq and BLISS map DNA double-strand break (DSB) sites, ?H2AX ChIP-seq detects genomic regions associated with the DNA damage response, and Damage-seq maps DNA damage sites at high resolution. Together, these datasets provide complementary information for investigating the genomic distribution of DNA damage and instability and their potential association with R-loop formation.