Human Gene CEBPB (ENST00000303004.5) Description and Page Index
  Description: Homo sapiens CCAAT enhancer binding protein beta (CEBPB), transcript variant 1, mRNA. (from RefSeq NM_005194)
Gencode Transcript: ENST00000303004.5
Gencode Gene: ENSG00000172216.6
Transcript (Including UTRs)
   Position: hg38 chr20:50,190,830-50,192,668 Size: 1,839 Total Exon Count: 1 Strand: +
Coding Region
   Position: hg38 chr20:50,191,034-50,192,071 Size: 1,038 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsProtein StructureOther NamesMethods
Data last updated at UCSC: 2021-06-20 19:51:40

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr20:50,190,830-50,192,668)mRNA (may differ from genome)Protein (345 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaExonPrimerGeneCards
HGNCMGIPubMedUniProtKB

-  Comments and Description Text from UniProtKB
  ID: CEBPB_HUMAN
DESCRIPTION: RecName: Full=CCAAT/enhancer-binding protein beta; Short=C/EBP beta; AltName: Full=Liver activator protein; AltName: Full=Nuclear factor NF-IL6; AltName: Full=Transcription factor 5; Short=TCF-5;
FUNCTION: Important transcriptional activator in the regulation of genes involved in immune and inflammatory responses. Specifically binds to an IL-1 response element in the IL-6 gene. NF-IL6 also binds to regulatory regions of several acute-phase and cytokines genes. It probably plays a role in the regulation of acute-phase reaction, inflammation and hemopoiesis. The consensus recognition site is 5'-T[TG]NNGNAA[TG]-3'. Functions in brown adipose tissue (BAT) differentiation (By similarity). Regulates the transcriptional induction of peroxisome proliferator-activated receptor gamma (PPARG).
SUBUNIT: Binds DNA as a dimer and can form stable heterodimers with C/EBP alpha, delta and gamma. Interacts with TRIM28 and PTGES2. Interacts with PRDM16. Interacts with CCDC85B. Forms a complex with THOC5 (By similarity). Interacts with ZNF638; this interaction increases transcriptional activation (By similarity). Interacts with CIDEA and CIDEC; these interactions increase transcriptional activation of a subset of CEBPB downstream target genes (By similarity). Interacts with DDIT3/CHOP.
INTERACTION: P04637:TP53; NbExp=4; IntAct=EBI-969696, EBI-366083;
SUBCELLULAR LOCATION: Nucleus.
TISSUE SPECIFICITY: Expressed at low levels in the lung, kidney and spleen.
INDUCTION: By ER stress.
DOMAIN: the 9aaTAD motif is a transactivation domain present in a large number of yeast and animal transcription factors.
PTM: Sumoylated by polymeric chains of SUMO2 or SUMO3.
PTM: Phosphorylated at Thr-235 by RPS6KA1.
SIMILARITY: Belongs to the bZIP family. C/EBP subfamily.
SIMILARITY: Contains 1 bZIP (basic-leucine zipper) domain.
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/cebpb/";

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR004827 - bZIP
IPR016468 - CCAAT/enhancer-binding

Pfam Domains:
PF07716 - Basic region leucine zipper

Protein Data Bank (PDB) 3-D Structure
MuPIT help

1GTW
- X-ray

1GU4
- X-ray

1GU5
- X-ray
To conserve bandwidth, only the images from the first 3 structures are shown.
1H88 - X-ray 1H89 - X-ray 1H8A - X-ray
1HJB - X-ray 1IO4 - X-ray 2E42 - X-ray
2E43 - X-ray


ModBase Predicted Comparative 3D Structure on P17676
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-  Other Names for This Gene
  UCSC ID: ENST00000303004.5
Representative RNA: NM_005194
Protein: P17676 (aka CEBPB_HUMAN)

+  Methods, Credits, and Use Restrictions
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