Human Gene IRF3 (ENST00000377139.8) Description and Page Index
  Description: Homo sapiens interferon regulatory factor 3 (IRF3), transcript variant 1, mRNA. (from RefSeq NM_001571)
Gencode Transcript: ENST00000377139.8
Gencode Gene: ENSG00000126456.16
Transcript (Including UTRs)
   Position: hg38 chr19:49,659,572-49,665,857 Size: 6,286 Total Exon Count: 8 Strand: -
Coding Region
   Position: hg38 chr19:49,659,648-49,664,838 Size: 5,191 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsProtein StructureOther NamesMethods
Data last updated at UCSC: 2021-06-20 19:51:40

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:49,659,572-49,665,857)mRNA (may differ from genome)Protein (427 aa)
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-  Comments and Description Text from UniProtKB
  ID: IRF3_HUMAN
DESCRIPTION: RecName: Full=Interferon regulatory factor 3; Short=IRF-3;
FUNCTION: Key transcriptional regulator of type I interferon (IFN)-dependent immune responses and plays a critical role in the innate immune response against DNA and RNA viruses. Regulates the transcription of type I IFN genes (IFN-alpha and IFN-beta) and IFN-stimulated genes (ISG) by binding to an interferon-stimulated response element (ISRE) in their promoters. Acts as a more potent activator of the IFN-beta (IFNB) gene than the IFN-alpha (IFNA) gene and plays a critical role in both the early and late phases of the IFNA/B gene induction. Found in an inactive form in the cytoplasm of uninfected cells and following viral infection, double-stranded RNA (dsRNA), or toll-like receptor (TLR) signaling, becomes phosphorylated by IKBKE and TBK1 kinases. This induces a conformational change, leading to its dimerization and nuclear localization and association with CREB binding protein (CREBBP) to form dsRNA-activated factor 1 (DRAF1), a complex which activates the transcription of the type I IFN and ISG genes. Can activate distinct gene expression programs in macrophages and can induce significant apoptosis in primary macrophages.
ENZYME REGULATION: In the absence of viral infection, maintained as a monomer in an autoinhibited state and phosphorylation disrupts this autoinhibition leading to the liberation of the DNA- binding and dimerization activities and its nuclear localization where it can activate type I IFN and ISG genes.
SUBUNIT: Monomer. Homodimer; phosphorylation-induced. Heterodimer with IRF7. Interacts with CREBBP. May interact with MAVS. Interacts with IKBKE and TBK1. Interacts with TICAM1 and TICAM2. Interacts with rotavirus A NSP1 (via C-terminus); this interaction leads to the proteasome-dependent degradation of IRF3. Interacts with RBCK1. Interacts with TRIM21. Interacts with HERC5.
INTERACTION: Self; NbExp=9; IntAct=EBI-2650369, EBI-2650369; Q92793:CREBBP; NbExp=3; IntAct=EBI-2650369, EBI-81215; Q9Y5Q3:MAFB; NbExp=4; IntAct=EBI-2650369, EBI-3649340; P06400:RB1; NbExp=2; IntAct=EBI-2650369, EBI-491274; P28749:RBL1; NbExp=2; IntAct=EBI-2650369, EBI-971402; O43765:SGTA; NbExp=3; IntAct=EBI-2650369, EBI-347996; Q9UHD2:TBK1; NbExp=4; IntAct=EBI-2650369, EBI-356402;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Note=Shuttles between cytoplasmic and nuclear compartments, with export being the prevailing effect. When activated, IRF3 interaction with CREBBP prevents its export to the cytoplasm.
TISSUE SPECIFICITY: Expressed constitutively in a variety of tissues.
PTM: Constitutively phosphorylated on many serines residues. C- terminal serine/threonine cluster is phosphorylated in response of induction by IKBKE and TBK1. Ser-385 and Ser-386 may be specifically phosphorylated in response to induction. An alternate model propose that the five serine/threonine residues between 396 and 405 are phosphorylated in response to a viral infection. Phosphorylation, and subsequent activation of IRF3 is inhibited by vaccinia virus protein E3.
PTM: Ubiquitinated; ubiquitination involves RBCK1 leading to proteasomal degradation. Polyubiquitinated; ubiquitination involves TRIM21 leading to proteasomal degradation.
PTM: ISGylated by HERC5 resulting in sustained IRF3 activation and in the inhibition of IRF3 ubiquitination by disrupting PIN1 binding. The phosphorylation state of IRF3 does not alter ISGylation.
SIMILARITY: Belongs to the IRF family.
SIMILARITY: Contains 1 IRF tryptophan pentad repeat DNA-binding domain.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR019817 - Interferon_reg_fac_CS
IPR001346 - Interferon_reg_fact_DNA-bd_dom
IPR019471 - Interferon_reg_factor-3
IPR017855 - SMAD_dom-like
IPR008984 - SMAD_FHA_domain
IPR011991 - WHTH_trsnscrt_rep_DNA-bd

Pfam Domains:
PF00605 - Interferon regulatory factor transcription factor
PF10401 - Interferon-regulatory factor 3

Protein Data Bank (PDB) 3-D Structure
MuPIT help

1J2F
- X-ray

1QWT
- X-ray

1T2K
- X-ray
To conserve bandwidth, only the images from the first 3 structures are shown.
1ZOQ - X-ray 2O61 - X-ray 2O6G - X-ray
2PI0 - X-ray 3A77 - X-ray 3QU6 - X-ray


ModBase Predicted Comparative 3D Structure on Q14653
FrontTopSide
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