Human Gene RBMX (ENST00000320676.11) Description and Page Index
  Description: Homo sapiens RNA binding motif protein X-linked (RBMX), transcript variant 4, non-coding RNA. (from RefSeq NR_028477)
Gencode Transcript: ENST00000320676.11
Gencode Gene: ENSG00000147274.14
Transcript (Including UTRs)
   Position: hg38 chrX:136,873,461-136,880,725 Size: 7,265 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg38 chrX:136,874,142-136,879,427 Size: 5,286 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsProtein StructureOther NamesMethods
Data last updated at UCSC: 2021-06-20 19:51:40

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:136,873,461-136,880,725)mRNA (may differ from genome)Protein (391 aa)
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-  Comments and Description Text from UniProtKB
  ID: RBMX_HUMAN
DESCRIPTION: RecName: Full=RNA-binding motif protein, X chromosome; AltName: Full=Glycoprotein p43; AltName: Full=Heterogeneous nuclear ribonucleoprotein G; Short=hnRNP G; Contains: RecName: Full=RNA-binding motif protein, X chromosome, N-terminally processed;
FUNCTION: RNA-binding protein that plays several role in the regulation of pre- and post-transcriptional processes. Implicated in tissue-specific regulation of gene transcription and alternative splicing of several pre-mRNAs. Binds to and stimulates transcription from the tumor suppressor TXNIP gene promoter; may thus be involved in tumor suppression. When associated with SAFB, binds to and stimulates transcription from the SREBF1 promoter. Associates with nascent mRNAs transcribed by RNA polymerase II. Component of the supraspliceosome complex that regulates pre-mRNA alternative splice site selection. Can either activate or suppress exon inclusion; acts additively with TRA2B to promote exon 7 inclusion of the survival motor neuron SMN2. Represses the splicing of MAPT/Tau exon 10. Binds preferentially to single- stranded 5'-CC[A/C]-rich RNA sequence motifs localized in a single-stranded conformation; probably binds RNA as a homodimer. Binds non-specifically to pre-mRNAs. Plays also a role in the cytoplasmic TNFR1 trafficking pathways; promotes both the IL-1- beta-mediated inducible proteolytic cleavage of TNFR1 ectodomains and the release of TNFR1 exosome-like vesicles to the extracellular compartment.
SUBUNIT: Homomultimer. Interacts with SAFB/SAFB1 (By similarity). Found in the supraspliceosome complex. Identified in the spliceosome C complex. Interacts with KHDRBS3. Forms a complex with ILF2, ILF3, YLPM1, KHDRBS1, NCOA5 and PPP1CA. Interacts with CLK2, KHDRBS2, SAFB, TRA2B and YTHDC1. Interacts with ERAP1; the interaction is RNA-independent.
INTERACTION: Q5VWX1:KHDRBS2; NbExp=2; IntAct=EBI-743526, EBI-742808;
SUBCELLULAR LOCATION: Nucleus. Note=Component of ribonucleosomes. Localizes in numerous small granules in the nucleus.
TISSUE SPECIFICITY: Expressed strongly in oral keratinocytes, but only weakly detected in oral squamous cell carcinomas (at protein level).
DOMAIN: The RRM domain is necessary for RNA-binding, but not for splice site selection, indicating that its splicing activity does not require direct binding to RNA (By similarity).
PTM: O-glycosylated.
PTM: Arg-185 is dimethylated, probably to asymmetric dimethylarginine.
PTM: Cleavage of initiator Met is partial. If Met-1 is not removed, it is acetylated. If it is removed, Val-2 is acetylated.
SIMILARITY: Contains 1 RRM (RNA recognition motif) domain.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR012677 - Nucleotide-bd_a/b_plait
IPR012604 - RBM1CTR
IPR000504 - RRM_dom

Pfam Domains:
PF08081 - RBM1CTR (NUC064) family
PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

ModBase Predicted Comparative 3D Structure on P38159
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-  Other Names for This Gene
  UCSC ID: ENST00000320676.11
Representative RNA: NR_028477
Protein: P38159 (aka RBMX_HUMAN)

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.