Human Gene GYPC (ENST00000409836.3) Description and Page Index
  Description: Homo sapiens glycophorin C (Gerbich blood group) (GYPC), transcript variant 2, mRNA. (from RefSeq NM_016815)
Gencode Transcript: ENST00000409836.3
Gencode Gene: ENSG00000136732.16
Transcript (Including UTRs)
   Position: hg38 chr2:126,656,184-126,696,664 Size: 40,481 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg38 chr2:126,656,264-126,696,142 Size: 39,879 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsProtein StructureOther NamesMethods
Data last updated at UCSC: 2021-06-20 19:51:40

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:126,656,184-126,696,664)mRNA (may differ from genome)Protein (109 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaExonPrimerGeneCards
HGNCMGIPubMedUniProtKB

-  Comments and Description Text from UniProtKB
  ID: GLPC_HUMAN
DESCRIPTION: RecName: Full=Glycophorin-C; AltName: Full=Glycoconnectin; AltName: Full=Glycophorin-D; Short=GPD; AltName: Full=Glycoprotein beta; AltName: Full=PAS-2'; AltName: Full=Sialoglycoprotein D; AltName: CD_antigen=CD236;
FUNCTION: This protein is a minor sialoglycoprotein in human erythrocyte membranes. The blood group Gerbich antigens and receptors for Plasmodium falciparum merozoites are most likely located within the extracellular domain. Glycophorin-C plays an important role in regulating the stability of red cells.
SUBCELLULAR LOCATION: Cell membrane; Single-pass type III membrane protein. Note=Linked to the membrane via band 4.1.
TISSUE SPECIFICITY: Glycophorin-C is expressed in erythrocytes. Glycophorin-D is ubiquitous.
PTM: O-glycosylated with core 1 or possibly core 8 glycans.
POLYMORPHISM: GYPC is responsible for the Gerbich blood group system. Deletion of exon 3 in GYPC changes the serologic phenotype of the Gerbich blood group system, resulting in Ge negativity. Ge negative individuals are protected against severe malaria due to erythrocytes resistance to Plasmodium falciparum invasion [MIM:611162].
SIMILARITY: Belongs to the glycophorin-C family.
SEQUENCE CAUTION: Sequence=CAA32093.1; Type=Frameshift; Positions=35;
WEB RESOURCE: Name=dbRBC/BGMUT; Note=Blood group antigen gene mutation database; URL="http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.cgi?cmd=bgmut/systems_info&system=gerbich";
WEB RESOURCE: Name=Wikipedia; Note=Glycophorin C entry; URL="http://en.wikipedia.org/wiki/Glycophorin_C";
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/gypc/";

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003585 - Neurexin-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help

2EJY
- NMR


ModBase Predicted Comparative 3D Structure on P04921
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-  Other Names for This Gene
  UCSC ID: ENST00000409836.3
Representative RNA: NM_016815
Protein: P04921 (aka GLPC_HUMAN)

+  Methods, Credits, and Use Restrictions
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