Human Gene SP100 (ENST00000409897.5) Description and Page Index
  Description: Homo sapiens SP100 nuclear antigen (SP100), transcript variant 6, mRNA. (from RefSeq NM_001206704)
Gencode Transcript: ENST00000409897.5
Gencode Gene: ENSG00000067066.17
Transcript (Including UTRs)
   Position: hg38 chr2:230,416,756-230,470,530 Size: 53,775 Total Exon Count: 16 Strand: +
Coding Region
   Position: hg38 chr2:230,440,556-230,470,112 Size: 29,557 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsProtein StructureOther NamesMethods
Data last updated at UCSC: 2021-06-20 19:51:40

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:230,416,756-230,470,530)mRNA (may differ from genome)Protein (445 aa)
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-  Comments and Description Text from UniProtKB
  ID: SP100_HUMAN
DESCRIPTION: RecName: Full=Nuclear autoantigen Sp-100; AltName: Full=Lysp100b; AltName: Full=Nuclear dot-associated Sp100 protein; AltName: Full=Speckled 100 kDa;
FUNCTION: May play a role in the control of gene expression.
SUBUNIT: Homodimer. Splice variants heterodimerize. Interacts with members of the HP1 family of nonhistone chromosomal protein, such as CBX5 and CBX3 via the PxVxL motif. Interacts with Epstein-Barr virus EBNA-LP. Interacts with human cytomegalovirus/HHV-5 protein UL123.
INTERACTION: P55854:SUMO3; NbExp=2; IntAct=EBI-751145, EBI-474067;
SUBCELLULAR LOCATION: Nucleus, PML body. Note=Found in the nuclear body, also known as nuclear domain 10 (ND10), PML oncogenic domain (POD), nuclear dots (ND) and KR body. The nuclear body is a nucleoplasmic structure of punctate shape, which varies in size and number. Induction by interferon and may be cell cycle stages modulate the subnuclear localization of the isoforms.
TISSUE SPECIFICITY: Widely expressed. Sp100-B is expressed only in spleen, tonsil, thymus, mature B-cell line and some T-cell line, but not in brain, liver, muscle or non-lymphoid cell lines.
INDUCTION: By interferon.
DOMAIN: The HSR domain is important for the nuclear body targeting as well as for the dimerization.
DOMAIN: Contains one Pro-Xaa-Val-Xaa-Leu (PxVxL) motif, which is required for interaction with chromoshadow domains. This motif requires additional residues -7, -6, +4 and +5 of the central Val which contact the chromoshadow domain.
PTM: Sumoylated. Sumoylation depends on a functional nuclear localization signal but is not necessary for nuclear import or nuclear body targeting.
MISCELLANEOUS: The major isoform Sp100-A, has a calculated MW of 54 kDa, but exhibits aberrant electrophoretic mobilities, with an apparent MW OF 100 kDa.
SIMILARITY: Contains 2 HMG box DNA-binding domains.
SIMILARITY: Contains 1 HSR domain.
SIMILARITY: Contains 1 SAND domain.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009071 - HMG_superfamily
IPR000770 - SAND_dom
IPR010919 - SAND_dom-like
IPR004865 - Sp100

Pfam Domains:
PF09011 - HMG-box domain
PF00505 - HMG (high mobility group) box
PF01342 - SAND domain
PF03172 - HSR domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help

1H5P
- NMR


ModBase Predicted Comparative 3D Structure on P23497
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-  Other Names for This Gene
  UCSC ID: ENST00000409897.5
Representative RNA: NM_001206704
Protein: P23497 (aka SP100_HUMAN)

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.