Human Gene SCN2A (ENST00000375437.7) Description and Page Index
  Description: Homo sapiens sodium voltage-gated channel alpha subunit 2 (SCN2A), transcript variant 2, mRNA. (from RefSeq NM_001040142)
Gencode Transcript: ENST00000375437.7
Gencode Gene: ENSG00000136531.18
Transcript (Including UTRs)
   Position: hg38 chr2:165,239,414-165,392,304 Size: 152,891 Total Exon Count: 27 Strand: +
Coding Region
   Position: hg38 chr2:165,295,824-165,389,824 Size: 94,001 Coding Exon Count: 26 

Page IndexSequence and LinksUniProtKB CommentsProtein StructureOther NamesMethods
Data last updated at UCSC: 2021-06-20 19:51:40

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:165,239,414-165,392,304)mRNA (may differ from genome)Protein (2005 aa)
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HGNCMGIPubMedUniProtKB

-  Comments and Description Text from UniProtKB
  ID: SCN2A_HUMAN
DESCRIPTION: RecName: Full=Sodium channel protein type 2 subunit alpha; AltName: Full=HBSC II; AltName: Full=Sodium channel protein brain II subunit alpha; AltName: Full=Sodium channel protein type II subunit alpha; AltName: Full=Voltage-gated sodium channel subunit alpha Nav1.2;
FUNCTION: Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.
SUBUNIT: The sodium channel consists of a large polypeptide and 2- 3 smaller ones. This sequence represents a large polypeptide. Interacts with NEDD4L (By similarity).
SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein.
DOMAIN: The sequence contains 4 internal repeats, each with 5 hydrophobic segments (S1,S2,S3,S5,S6) and one positively charged segment (S4). Segments S4 are probably the voltage-sensors and are characterized by a series of positively charged amino acids at every third position.
PTM: May be ubiquitinated by NEDD4L; which would promote its endocytosis (By similarity).
DISEASE: Defects in SCN2A are the cause of seizures, benign familial infantile type 3 (BFIS3) [MIM:607745]. An autosomal dominant disorder in which afebrile seizures occur in clusters during the first year of life, without neurologic sequelae.
DISEASE: Defects in SCN2A are the cause of epileptic encephalopathy early infantile type 11 (EIEE11) [MIM:613721]. EIEE11 is an autosomal dominant seizure disorder characterized by infantile onset of refractory seizures with resultant delayed neurologic development and persistent neurologic abnormalities.
SIMILARITY: Belongs to the sodium channel (TC 1.A.1.10) family. Nav1.2/SCN2A subfamily.
SIMILARITY: Contains 1 IQ domain.
SEQUENCE CAUTION: Sequence=CAA46438.1; Type=Frameshift; Positions=1953; Sequence=CAA46438.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Sequence of unknown origin in the C-terminal part;
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/SCN2A";

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR024583 - DUF3451
IPR005821 - Ion_trans_dom
IPR000048 - IQ_motif_EF-hand-BS
IPR001696 - Na_channel_asu
IPR010526 - Na_trans_assoc

Pfam Domains:
PF11933 - Cytoplasmic domain of voltage-gated Na+ ion channel
PF00520 - Ion transport protein
PF06512 - Sodium ion transport-associated

Protein Data Bank (PDB) 3-D Structure
MuPIT help

2KAV
- NMR


ModBase Predicted Comparative 3D Structure on Q99250
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-  Other Names for This Gene
  UCSC ID: ENST00000375437.7
Representative RNA: NM_001040142
Protein: Q99250 (aka SCN2A_HUMAN or CIN2_HUMAN)

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.