Human Gene NCOA1 (ENST00000406961.5) Description and Page Index
  Description: Homo sapiens nuclear receptor coactivator 1 (NCOA1), transcript variant 1, mRNA. (from RefSeq NM_003743)
Gencode Transcript: ENST00000406961.5
Gencode Gene: ENSG00000084676.15
Transcript (Including UTRs)
   Position: hg38 chr2:24,491,932-24,770,702 Size: 278,771 Total Exon Count: 23 Strand: +
Coding Region
   Position: hg38 chr2:24,658,678-24,768,391 Size: 109,714 Coding Exon Count: 19 

Page IndexSequence and LinksUniProtKB CommentsProtein StructureOther NamesMethods
Data last updated at UCSC: 2021-06-20 19:51:40

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:24,491,932-24,770,702)mRNA (may differ from genome)Protein (1441 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaExonPrimerGeneCards
HGNCMGIPubMedUniProtKB

-  Comments and Description Text from UniProtKB
  ID: NCOA1_HUMAN
DESCRIPTION: RecName: Full=Nuclear receptor coactivator 1; Short=NCoA-1; EC=2.3.1.48; AltName: Full=Class E basic helix-loop-helix protein 74; Short=bHLHe74; AltName: Full=Protein Hin-2; AltName: Full=RIP160; AltName: Full=Renal carcinoma antigen NY-REN-52; AltName: Full=Steroid receptor coactivator 1; Short=SRC-1;
FUNCTION: Nuclear receptor coactivator that directly binds nuclear receptors and stimulates the transcriptional activities in a hormone-dependent fashion. Involved in the coactivation of different nuclear receptors, such as for steroids (PGR, GR and ER), retinoids (RXRs), thyroid hormone (TRs) and prostanoids (PPARs). Also involved in coactivation mediated by STAT3, STAT5A, STAT5B and STAT6 transcription factors. Displays histone acetyltransferase activity toward H3 and H4; the relevance of such activity remains however unclear. Plays a central role in creating multisubunit coactivator complexes that act via remodeling of chromatin, and possibly acts by participating in both chromatin remodeling and recruitment of general transcription factors. Required with NCOA2 to control energy balance between white and brown adipose tissues. Required for mediating steroid hormone response. Isoform 2 has a higher thyroid hormone-dependent transactivation activity than isoform 1 and isoform 3.
CATALYTIC ACTIVITY: Acetyl-CoA + [histone] = CoA + acetyl- [histone].
SUBUNIT: Interacts with the methyltransferase CARM1 (By similarity). Interacts with NCOA6 and NCOA2. Interacts with the FDL motif of STAT5A and STAT5B. Interacts with the LXXLL motif of STAT6. Interacts with STAT3 following IL-6 stimulation. Interacts with the basal transcription factor GTF2B. Interacts with the histone acetyltransferases EP300 and CREBBP. Interacts with PCAF, COPS5, NR3C1 and TTLL5/STAMP. Interacts with PSMB9. Interacts with UBE2L3; they functionally interact to regulate progesterone receptor transcriptional activity. Interacts with PRMT2 and DDX5. Interacts with ASXL1.
INTERACTION: P59598:Asxl1 (xeno); NbExp=2; IntAct=EBI-455189, EBI-5743705; P03372:ESR1; NbExp=5; IntAct=EBI-455189, EBI-78473; P19785:Esr1 (xeno); NbExp=2; IntAct=EBI-455189, EBI-346765; P25799:Nfkb1 (xeno); NbExp=2; IntAct=EBI-455189, EBI-643958; P06536:Nr3c1 (xeno); NbExp=2; IntAct=EBI-455189, EBI-1187143;
SUBCELLULAR LOCATION: Nucleus (By similarity).
TISSUE SPECIFICITY: Widely expressed.
DOMAIN: The C-terminal (1107-1441) part mediates the histone acetyltransferase (HAT) activity.
DOMAIN: Contains 7 Leu-Xaa-Xaa-Leu-Leu (LXXLL) motifs. LXXLL motifs 3, 4 and 5 are essential for the association with nuclear receptors. LXXLL motif 7, which is not present in isoform 2, increases the affinity for steroid receptors in vitro.
PTM: Sumoylated; sumoylation increases its interaction with PGR and prolongs its retention in the nucleus. It does not prevent its ubiquitination and does not exert a clear effect on the stability of the protein.
PTM: Ubiquitinated; leading to proteasome-mediated degradation. Ubiquitination and sumoylation take place at different sites.
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.
DISEASE: Note=A chromosomal aberration involving NCOA1 is a cause of rhabdomyosarcoma. Translocation t(2;2)(q35;p23) with PAX3 generates the NCOA1-PAX3 oncogene consisting of the N-terminus part of PAX3 and the C-terminus part of NCOA1. The fusion protein acts as a transcriptional activator. Rhabdomyosarcoma is the most common soft tissue carcinoma in childhood, representing 5-8% of all malignancies in children.
SIMILARITY: Belongs to the SRC/p160 nuclear receptor coactivator family.
SIMILARITY: Contains 1 bHLH (basic helix-loop-helix) domain.
SIMILARITY: Contains 1 PAS (PER-ARNT-SIM) domain.
SEQUENCE CAUTION: Sequence=AAA64187.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=AAC50305.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/ncoa1/";

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR010011 - DUF1518
IPR011598 - HLH_dom
IPR009110 - Nuc_rcpt_coact
IPR014920 - Nuc_rcpt_coact_Ncoa-typ
IPR017426 - Nuclear_rcpt_coactivator
IPR000014 - PAS
IPR013767 - PAS_fold
IPR014935 - SRC-1
IPR008955 - Src1_rcpt_coact

Pfam Domains:
PF07469 - Domain of unknown function (DUF1518)
PF08815 - Nuclear receptor coactivator
PF00989 - PAS fold
PF08832 - Steroid receptor coactivator

Protein Data Bank (PDB) 3-D Structure
MuPIT help

1FM6
- X-ray

1FM9
- X-ray

1K4W
- X-ray
To conserve bandwidth, only the images from the first 3 structures are shown.
1K74 - X-ray 1K7L - X-ray 1KV6 - X-ray
1N4H - X-ray 1NQ7 - X-ray 1NRL - X-ray
1P8D - X-ray 1PZL - X-ray 1RDT - X-ray
1TFC - X-ray 1U3R - X-ray 1U3S - X-ray
1X76 - X-ray 1X78 - X-ray 1X7B - X-ray
1X7J - X-ray 1XIU - X-ray 1XV9 - X-ray
1XVP - X-ray 1YY4 - X-ray 1YYE - X-ray
1ZAF - X-ray 2A3I - X-ray 2C52 - NMR
2FVJ - X-ray 2GTK - X-ray 2HBH - X-ray
2HC4 - X-ray 2HCD - X-ray 2HFP - X-ray
2NPA - X-ray 2NV7 - X-ray 2P54 - X-ray
2PRG - X-ray 3BEJ - X-ray 3BQD - X-ray
3CTB - X-ray 3CWD - X-ray 3DCT - X-ray
3DCU - X-ray 3DR1 - X-ray 3ET1 - X-ray
3ET3 - X-ray 3FEI - X-ray 3FEJ - X-ray
3FUR - X-ray 3FXV - X-ray 3G8I - X-ray
3G9E - X-ray 3H0A - X-ray 3HC5 - X-ray
3HC6 - X-ray 3HVL - X-ray 3IPQ - X-ray
3IPS - X-ray 3IPU - X-ray 3KMR - X-ray
3LMP - X-ray 3OKH - X-ray 3OKI - X-ray
3OLF - X-ray 3OLL - X-ray 3OLS - X-ray
3OMK - X-ray 3OMM - X-ray 3OMO - X-ray
3OMP - X-ray 3OMQ - X-ray 3OOF - X-ray
3OOK - X-ray 3P88 - X-ray 3P89 - X-ray
3QT0 - X-ray 3RUT - X-ray 3RUU - X-ray
3RVF - X-ray 3S9S - X-ray 3T03 - X-ray
3UU7 - X-ray 3UUA - X-ray 3UUD - X-ray
3V9Y - X-ray 3VN2 - X-ray 4DK7 - X-ray
4DK8 - X-ray 4DM6 - X-ray 4DM8 - X-ray
4DQM - X-ray 4F9M - X-ray 4G1D - X-ray
4G1Y - X-ray 4G1Z - X-ray 4G20 - X-ray
4G21 - X-ray 4G2H - X-ray


ModBase Predicted Comparative 3D Structure on Q15788
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

+  Other Names for This Gene
  Press "+" in the title bar above to open this section.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.