Human Gene DDX21 (ENST00000354185.9) Description and Page Index
  Description: Homo sapiens DExD-box helicase 21 (DDX21), transcript variant 1, mRNA. (from RefSeq NM_004728)
Gencode Transcript: ENST00000354185.9
Gencode Gene: ENSG00000165732.13
Transcript (Including UTRs)
   Position: hg38 chr10:68,956,170-68,985,068 Size: 28,899 Total Exon Count: 15 Strand: +
Coding Region
   Position: hg38 chr10:68,956,226-68,982,812 Size: 26,587 Coding Exon Count: 15 

Page IndexSequence and LinksUniProtKB CommentsProtein StructureOther NamesMethods
Data last updated at UCSC: 2021-06-20 19:51:40

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:68,956,170-68,985,068)mRNA (may differ from genome)Protein (783 aa)
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-  Comments and Description Text from UniProtKB
  ID: DDX21_HUMAN
DESCRIPTION: RecName: Full=Nucleolar RNA helicase 2; EC=3.6.4.13; AltName: Full=DEAD box protein 21; AltName: Full=Gu-alpha; AltName: Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar RNA helicase II; AltName: Full=RH II/Gu;
FUNCTION: Can unwind double-stranded RNA (helicase) and can fold or introduce a secondary structure to a single-stranded RNA (foldase). Functions as cofactor for JUN-activated transcription. Involved in rRNA processing.
CATALYTIC ACTIVITY: ATP + H(2)O = ADP + phosphate.
SUBUNIT: Component of the B-WICH complex, at least composed of SMARCA5/SNF2H, BAZ1B/WSTF, SF3B1, DEK, MYO1C, ERCC6, MYBBP1A and DDX21.
SUBCELLULAR LOCATION: Nucleus, nucleolus.
DOMAIN: The two enzymatic activities reside in two separate domains, the helicase in the N-terminus and the foldase in the C- terminus.
DOMAIN: The 3 X 5 AA repeats seem to be critical for the RNA folding activity (By similarity).
MISCELLANEOUS: Autoantibodies against DDX21 are found in patients with watermelon stomach disease, which is characterized by prominent stripes of ectatic vascular tissue in the stomach similar to stripes on a watermelon.
SIMILARITY: Belongs to the DEAD box helicase family. DDX21/DDX50 subfamily.
SIMILARITY: Contains 1 helicase ATP-binding domain.
SIMILARITY: Contains 1 helicase C-terminal domain.
SEQUENCE CAUTION: Sequence=AAB02546.1; Type=Erroneous initiation;

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011545 - DNA/RNA_helicase_DEAD/DEAH_N
IPR012562 - GUCT
IPR014001 - Helicase_ATP-bd
IPR001650 - Helicase_C
IPR014014 - RNA_helicase_DEAD_Q_motif

Pfam Domains:
PF00270 - DEAD/DEAH box helicase
PF08152 - GUCT (NUC152) domain
PF00271 - Helicase conserved C-terminal domain

ModBase Predicted Comparative 3D Structure on Q9NR30
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