Human Gene ELOC (ENST00000284811.12) Description and Page Index
  Description: SIII, also known as elongin, is a general transcription elongation factor that increases the RNA polymerase II transcription elongation past template-encoded arresting sites. Subunit A is transcriptionally active and its transcription activity is strongly enhanced by binding to the dimeric complex of the SIII regulatory subunits B and C (elongin BC complex). (from UniProt Q15369)
Gencode Transcript: ENST00000284811.12
Gencode Gene: ENSG00000154582.17
Transcript (Including UTRs)
   Position: hg38 chr8:73,946,401-73,972,106 Size: 25,706 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg38 chr8:73,946,630-73,959,768 Size: 13,139 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsProtein StructureOther NamesMethods
Data last updated at UCSC: 2021-06-20 19:51:40

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:73,946,401-73,972,106)mRNA (may differ from genome)Protein (112 aa)
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MGIPubMedUniProtKB

-  Comments and Description Text from UniProtKB
  ID: ELOC_HUMAN
DESCRIPTION: RecName: Full=Transcription elongation factor B polypeptide 1; AltName: Full=Elongin 15 kDa subunit; AltName: Full=Elongin-C; Short=EloC; AltName: Full=RNA polymerase II transcription factor SIII subunit C; AltName: Full=SIII p15;
FUNCTION: SIII, also known as elongin, is a general transcription elongation factor that increases the RNA polymerase II transcription elongation past template-encoded arresting sites. Subunit A is transcriptionally active and its transcription activity is strongly enhanced by binding to the dimeric complex of the SIII regulatory subunits B and C (elongin BC complex).
FUNCTION: The elongin BC complex seems to be involved as an adapter protein in the proteasomal degradation of target proteins via different E3 ubiquitin ligase complexes, including the von Hippel-Lindau ubiquitination complex CBC(VHL). By binding to BC- box motifs it seems to link target recruitment subunits, like VHL and members of the SOCS box family, to Cullin/RBX1 modules that activate E2 ubiquitination enzymes.
SUBUNIT: Heterotrimer of an A (A1, A2 or A3), B and C subunit. Part of E3 ubiquitin ligase complexes with CUL5 or CUL2, RBX1 and a substrate adapter protein that can be either SOCS1, SOCS5, TCEB3, VHL or WSB1 (By similarity). The elongin BC complex is part of a complex with hydroxylated HIF1A. Substrate adapter protein can be a viral protein such as HIV Vif. Interacts with VHL. Interacts with TMF1. Interacts with human respiratory syncytial virus (HRSV) protein NS1.
INTERACTION: Q96G25:MED8; NbExp=3; IntAct=EBI-301231, EBI-394405; Q99619:SPSB2; NbExp=3; IntAct=EBI-301231, EBI-2323209; Q96A44:SPSB4; NbExp=2; IntAct=EBI-301231, EBI-2323233; Q15370:TCEB2; NbExp=3; IntAct=EBI-301231, EBI-301238; P12504:vif (xeno); NbExp=5; IntAct=EBI-301231, EBI-779991;
SUBCELLULAR LOCATION: Nucleus (Probable).
TISSUE SPECIFICITY: Overexpressed in prostate cancer cell line PC- 3 and breast cancer cell line SK-BR-3.
SIMILARITY: Belongs to the SKP1 family.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011333 - BTB/POZ_fold
IPR001232 - Skp1_comp
IPR016073 - Skp1_comp_POZ

Pfam Domains:
PF03931 - Skp1 family, tetramerisation domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help

1LM8
- X-ray

1LQB
- X-ray

1VCB
- X-ray
To conserve bandwidth, only the images from the first 3 structures are shown.
2C9W - X-ray 2IZV - X-ray 2XAI - X-ray
3DCG - X-ray 3ZRC - X-ray 3ZRF - X-ray
3ZTC - X-ray 3ZTD - X-ray 3ZUN - X-ray


ModBase Predicted Comparative 3D Structure on Q15369
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-  Other Names for This Gene
  UCSC ID: ENST00000284811.12
Representative RNA: BC013809
Protein: Q15369 (aka ELOC_HUMAN)

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.