Schema for Regulator

Schema for Regulator - Regulator

Database: hg38 Primary Table: bigbed_CLIP_AQR Data last updated: 2026-04-30
Big Bed File: /data01/chenjy/rloopbase/ucsc/gbdb/hg38/inhouse-tracks/bigbed/regulator/CLIP_AQR.bb
Item Count: 289,718
Format description: Browser Extensible Data

field	example	description
`chrom`	chr1	Reference sequence chromosome or scaffold
`chromStart`	166076738	Start position in chromosome
`chromEnd`	166076748	End position in chromosome
`name`	K562_exp1_14834	Name of item.
`score`	1000	Score (0-1000)
`strand`	-	+ or - for strand

Sample Rows

chrom	chromStart	chromEnd	name	score	strand
chr1	166076738	166076748	K562_exp1_14834	1000	-
chr1	166076748	166076781	K562_exp1_14835	1000	-
chr1	166839585	166839637	K562_exp1_14836	1000	+
chr1	166839596	166839646	HepG2_exp1_7132	1000	+
chr1	166839764	166839851	HepG2_exp1_7133	1000	+
chr1	166839781	166839897	K562_exp1_14837	1000	+
chr1	166840916	166840970	HepG2_exp1_7134	1000	+
chr1	166840976	166841021	HepG2_exp1_7135	1000	+
chr1	166841008	166841037	K562_exp1_14838	1000	+
chr1	166841038	166841064	HepG2_exp1_7136	1000	+

Regulator (Regulator) Track Description


	Description To better understand the regulatory roles of R-loop regulators, we characterized their targeted R-loops by leveraging existing functional genomics data. Differential R-loop peaks upon regulator knockdown are likely direct targets of the corresponding regulator. In addition, R-loops may be directly modulated through the chromatin or RNA binding activities of their regulators. Accordingly, we cataloged putative targeted R-loops for 116 validated R-loop regulators in human cells based on knockdown, ChIP-seq, or CLIP-seq data. Each peak name encodes the cell line of origin.