Schema for RLFS_RloopDB

Schema for RLFS_RloopDB - RLFS_RloopDB

Database: hg38 Primary Table: RLFS Data last updated: 2026-07-02
Big Bed File: /data02/chenjy/rloopbase/ucsc/gbdb/hg38/inhouse-tracks/bigbed/RloopDB_RLFS_hg38.bb
Item Count: 170,926
Format description: Browser Extensible Data

field	example	description
`chrom`	chr1	Reference sequence chromosome or scaffold
`chromStart`	166058314	Start position in chromosome
`chromEnd`	166058470	End position in chromosome
`name`	hg19.chr1.157.166027551.region	Name of item.
`score`	0	Score (0-1000)
`strand`	+	+ or - for strand

Sample Rows

chrom	chromStart	chromEnd	name	strand
chr1	166058314	166058470	hg19.chr1.157.166027551.region	+
chr1	166064047	166064163	hg19.chr1.117.166033284.region	+
chr1	166078693	166078832	hg19.chr1.140.166047930.region	+
chr1	166079465	166079638	hg19.chr1.174.166048702.region	+
chr1	166082830	166082993	hg19.chr1.164.166052067.region	+
chr1	166086411	166086568	hg19.chr1.158.166055648.region	+
chr1	166087821	166087988	hg19.chr1.168.166057058.region	+
chr1	166089484	166089747	hg19.chr1.264.166058721.region	+
chr1	166093951	166094146	hg19.chr1.196.166063188.region	+
chr1	166095586	166095752	hg19.chr1.167.166064823.region	-

RLFS_RloopDB (RLFS) Track Description


	Description RLFS tracks represent R-loop forming regions predicted from sequence features by the R-loop DB database. Genomic coordinates were lifted from the hg19 assembly to hg38 using LiftOver. Reference Jenjaroenpun P, Wongsurawat T, Sutheeworapong S et al, R-loopDB: a database for R-loop forming sequences (RLFS) and R-loops.. Nucleic Acids Res. 2017 Jan 4;45(D1):D119-D127. PMID: 27899586

Description

Reference