Human Gene BRCA1 (ENST00000352993.7) Description and Page Index
  Description: E3 ubiquitin-protein ligase that specifically mediates the formation of 'Lys-6'-linked polyubiquitin chains and plays a central role in DNA repair by facilitating cellular responses to DNA damage. It is unclear whether it also mediates the formation of other types of polyubiquitin chains. The E3 ubiquitin-protein ligase activity is required for its tumor suppressor function. The BRCA1-BARD1 heterodimer coordinates a diverse range of cellular pathways such as DNA damage repair, ubiquitination and transcriptional regulation to maintain genomic stability. Regulates centrosomal microtubule nucleation. Required for normal cell cycle progression from G2 to mitosis. Required for appropriate cell cycle arrests after ionizing irradiation in both the S-phase and the G2 phase of the cell cycle. Involved in transcriptional regulation of P21 in response to DNA damage. Required for FANCD2 targeting to sites of DNA damage. May function as a transcriptional regulator. Inhibits lipid synthesis by binding to inactive phosphorylated ACACA and preventing its dephosphorylation. Contributes to homologous recombination repair (HRR) via its direct interaction with PALB2, fine-tunes recombinational repair partly through its modulatory role in the PALB2-dependent loading of BRCA2-RAD51 repair machinery at DNA breaks. Component of the BRCA1-RBBP8 complex which regulates CHEK1 activation and controls cell cycle G2/M checkpoints on DNA damage via BRCA1-mediated ubiquitination of RBBP8. (from UniProt P38398)
Gencode Transcript: ENST00000352993.7
Gencode Gene: ENSG00000012048.23
Transcript (Including UTRs)
   Position: hg38 chr17:43,044,295-43,125,370 Size: 81,076 Total Exon Count: 22 Strand: -
Coding Region
   Position: hg38 chr17:43,045,678-43,124,096 Size: 78,419 Coding Exon Count: 21 

Page IndexSequence and LinksUniProtKB CommentsProtein StructureOther NamesMethods
Data last updated at UCSC: 2021-06-20 19:51:40

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:43,044,295-43,125,370)mRNA (may differ from genome)Protein (721 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaExonPrimerGeneCards
HGNCMGIPubMedUniProtKB

+  Comments and Description Text from UniProtKB
  Press "+" in the title bar above to open this section.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011364 - BRCA1
IPR025994 - BRCA1_serine_dom
IPR001357 - BRCT_dom
IPR018957 - Znf_C3HC4_RING-type
IPR001841 - Znf_RING
IPR013083 - Znf_RING/FYVE/PHD
IPR017907 - Znf_RING_CS

Pfam Domains:
PF00533 - BRCA1 C Terminus (BRCT) domain
PF12820 - Serine-rich domain associated with BRCT
PF00097 - Zinc finger, C3HC4 type (RING finger)

Protein Data Bank (PDB) 3-D Structure
MuPIT help

1JM7
- NMR

1JNX
- X-ray

1N5O
- X-ray
To conserve bandwidth, only the images from the first 3 structures are shown.
1OQA - NMR 1T15 - X-ray 1T29 - X-ray
1T2U - X-ray 1T2V - X-ray 1Y98 - X-ray
2ING - X-ray 3COJ - X-ray 3K0H - X-ray
3K0K - X-ray 3K15 - X-ray 3K16 - X-ray
3PXA - X-ray 3PXB - X-ray 3PXC - X-ray
3PXD - X-ray 3PXE - X-ray


ModBase Predicted Comparative 3D Structure on P38398
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Other Names for This Gene
  UCSC ID: ENST00000352993.7
Representative RNA: BC072418
Protein: P38398 (aka BRCA1_HUMAN or BRC1_HUMAN)

+  Methods, Credits, and Use Restrictions
  Press "+" in the title bar above to open this section.